Software

pmd – Paired Mass Distance Analysis for GC/LC-MS Based Non-Targeted Analysis and Reactomics Analysis. The stable version of the pmd package can also be accessed from CRAN

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enet – Environment Network Analysis to identify important metabolites linking exposures to biological response

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RMWF – Reproducible Metabolomics WorkFlow (RMWF) is a R package for xcmsrocker

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MetaClean –Detection of Low-Quality Peaks in Untargeted LC-MS Metabolomics Data. The stable version of the MetaClean package can also be accessed from CRAN

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PMDDA - paired mass distance-dependent analysis (PMDDA) - automated workflow or reproducible untargeted mass spectrometry MS2 fragment ion collection of unknown compounds found in MS1 full scan. This can be assessed from CRAN