Software

pmd – Paired Mass Distance Analysis for GC/LC-MS Based Non-Targeted Analysis and Reactomics Analysis. The stable version of the pmd package can also be accessed from CRAN

enet Environment Network Analysis to identify important metabolites linking exposures to biological response

RMWF – Reproducible Metabolomics WorkFlow (RMWF) is a R package for xcmsrocker

MetaClean –Detection of Low-Quality Peaks in Untargeted LC-MS Metabolomics Data. The stable version of the MetaClean package can also be accessed from CRAN